Individuals crossing exclusively within the same population produce more progeny than those crossing in both directions and thereby use up some of their gametes for the production of inviable hybrids.
So it was an appropriate and good thing to bring them into captivity, to try to breed them, have a reintroduction program, if we care about protecting biodiversity.
The remnants of his vast web were still there, but the swarms of descendants he had spawned had been driven out by the Death Eaters, to fight for their cause.